Introduction ? Main critique theme Critique theme is ??focused and clearly explained ? Significance Makes clear what ??motivates the
Need a 20 slide long power point within 8 hrs
Introduction
Main critique theme
Critique theme is focused and clearly explained
Significance
Makes clear what motivates them to explore main theme/question and significance
Background
Explains background on the problem
Body content and article evaluation
Overall
each section of body content provides details of all 3 articles, articles are thoroughly but concisely compared, contrasted and evaluated clearly
Introduce articles
Give article details (citation), provide each paper's objective/hypotheses
Article methods
Methods summarized and evaluated completely for all 3 articles
Article results
Results are summarized and evaluated, tables/figures used from papers to help with critique
Article discussions
Discussions are summarized and thoroughly evaluated for all 3 articles
Summary
Summarizes strengths and weaknesses of each article, makes a concluding statement overall about the critique theme
Speculation
Suggests what should be done next, points out new questions raised by work
Citation slide
Any studies mentioned during the presentation are listed and all publication information given in a 'References' slide
Organization of presentation
Purpose of slides
Purpose of each slide is clear to the listener (title of slide contains premise)
Continuity
Effective transitions between slides contribute to a continuous sequence of connected ideas, slides flow well
Roadmap
Provides a roadmap/preview then several reminders/singpost during the talk so that the listener never feels lost
Figures
Every figure and image is clearly labeled and all figures are fully explained by the presenter
Attractiveness
slides are laid out well, text is easy to read and colors do not clash, there are no distracting transitions
Timing
15 min
The MRI Race: Brain Volume Deficiency in individuals with ADHD
Student Presenter
Department of Biology, East Central University
19 April 2019
Introduction roadmap
Background
What Is ADHD?
The MRI Race and Why We Care
Paper Citations
Papers
Paper #1
Paper #2
Paper #3
What is ADHD?
Single most common mental disorder affecting children1
5% of all children
2.5% of all adults
Characterized by: Inattention, hyperactivity, and impulsivity
(1) American Psychiatric Association
Stanford Medicine 2015 (image)
ADHD is caused by a wide variety of things. These include problems during pregnancy, premature birth, genetics, and some other things that scientists are still trying to figure out. ADHD is the single most common mental disorder affecting children, affecting 5% of all children and 2.5 percent of adults. ADHD is characterized by inattention, hyperactivity, and impulsivity.
I originally studied ADHD in my honors thesis. As a future developmental pediatrician I will diagnose and treat ADHD more than any other disorder. I have always been interested in the neurobiology behind ADHD, but using MRI to learn more about the specific structures and areas affected will benefit the future patients I look forward to serving.
3
The MRI race and why we care
Using MRI to visualize brain volumes:
Unique insight into ADHD brain volume deficiencies
National Institute of Mental Health 2007 (image)
Now we need to talk about the neurobiology of ADHD. Research shows that brains of those with AHD develop at a normal rate but is delayed by an average of three years in certain brain regions. If you look at this picture you can see that certain brain structures are delayed between the important ages of 7 and 13. For example the frontal cortex is delayed. The frontal cortex controls thinking, planning, and attention. All behaviors that are associated with ADHD.
4
Paper citations
Paper #1:
Hoogman M, Bralten J, Hibar DP, Mennes M, Zwiers MP, Schweren L, van Hulzen KJE, Medland SE, Shumskaya E, Jahanshad N, et al. Subcortical brain volume differences of participants with ADHD across the lifespan: an ENIGMA collaboration. The Lancet Psychiatry. 2017 Feb 16:1–39.
Paper #2:
Castellanos, F. X.; Lee, P. P.; Sharp, W.; Jeffries, N. O.; Greenstein, D. K.; Clasen, L. S. Developmental Trajectories of Brain Volume Abnormalities in Children and Adolescents With Attention-Deficit/Hyperactivity Disorder. Jama 2002, 288, 1740.
Paper #3:
Batty MJ, Liddle EB, Pitiot A, Toro R, Groom MJ, Scerif G, Liotti M, Liddle PF, Paus T, Hollis C. Cortical Gray Matter in Attention-Deficit/Hyperactivity Disorder. Journal of the American Academy of Child & Adolescent Psychiatry. 2010;49(3):229–238.
____ = date of publication
Paper #1: SubCortical Brain Volume Differences of Participants with ADHD Across the Lifespan: an ENIGMA Collaboration
Mega-analysis
1713 cases (ADHD)
1529 controls
Hoogman et al. 2017
Cliff Notes:
Size deficiency in all regions tested except the pallidum and thalamus
Psychostimulant medication & symptom severity: no effect on size
Paper #2: Developmental Trajectories of Brain Volume Abnormalities in Children and Adolescents With Attention-Deficit/Hyperactivity Disorder
Castellanos et al. 2002
152 cases (ADHD)
139 controls
Cliff Notes:
1. Stimulant medication increases volumes of all structures tested, but not at levels similar to controls
Paper #3: Cortical Gray Matter in Attention-Deficit/Hyperactivity Disorder: A Structural Magnetic Resonance Imaging Study
25 cases (ADHD)
24 controls
Cliff Notes:
Statistical deficit of the pars opercularis cortex
Hypothesis supported
Batty et al. 2010
Pars opercularis because of its connection to inhibitory control, a facet of ADHD behavior.
8
Analysis roadmap
Introduction
Methods
Results
Discussion
Overview
Introduction
Paper #1
Pros:
Framing the problem and objectives in separate subsections
Paper #2
Pros:
Detailed literature review
Paper #3
Pros:
Good mix of subject and literature review
Cons:
Missing a hypothesis
Cons:
Abstract skimpy in context and methods; heavy in results
Cons:
Title is general
Methods
Paper #1
Pros:
Repeatable description of overall experiment
Paper #2
Pros:
Repeatable patient gathering/ screening
Paper #3
Pros:
Matched every ADHD case with a control with matching demographics
Cons:
Questionable if experiment can be run without error at every lab
Cons:
Unnecessary page-long description of statistics
Cons:
No plan for MRI scans w/ movement; All participants on medication; 1 female
Results
Paper #1
Pros:
Focused on the effects of secondary variables on specific structures
Paper #2
Pros:
Included data linking behavior ratings with brain structures
Paper #3
Pros:
Data presentation answers objectives and hypothesis
Cons:
2 graphs for 4 data tables
Cons:
1 graph for 3 data tables
Cons:
Used color to distinguish data in a graph
discussion
Paper #1
Pros:
Advocates for DSM update to lower stigma
Paper #2
Pros:
Openly discussed limitations of study
Paper #3
Pros:
Proposed future experiments
Cons:
Discussed limitations, but heavily overshadowed by positives
Cons:
Repeats results
Cons:
Discussed only having a medication group but overlooked past research on subject
13
Overview
Paper #1
Pros:
Added Research in context section
Paper #2
Pros:
Data tables easy to read and interpret
Paper #3
Pros:
Free space for eyes to rest
Cons:
Graphs at end of paper
Cons:
Results section of abstract absurdly long
Cons:
Smallest number of brain scans
14
Conclusion
My favorite: Paper #1; Hoogman et al. 2017
My least favorite: Paper #3; Batty et al. 2010
Each article added to this body of research in their own distinct way
Interesting Note: Papers 1 & 3 referenced paper 2
Any questions?
,
Introduction |
|||
Main critique theme |
Critique theme is focused and clearly explained |
||
Significance |
Makes clear what motivates them to explore main theme/question and significance |
||
Background |
Explains background on the problem |
||
Body content and article evaluation |
|||
Overall |
each section of body content provides details of all 3 articles, articles are thoroughly but concisely compared, contrasted and evaluated clearly |
||
Introduce articles |
Give article details (citation), provide each paper's objective/hypotheses |
||
Article methods |
Methods summarized and evaluated completely for all 3 articles |
||
Article results |
Results are summarized and evaluated, tables/figures used from papers to help with critique |
||
Article discussions |
Discussions are summarized and thoroughly evaluated for all 3 articles |
||
Summary |
Summarizes strengths and weaknesses of each article, makes a concluding statement overall about the critique theme |
||
Speculation |
Suggests what should be done next, points out new questions raised by work |
||
Citation slide |
Any studies mentioned during the presentation are listed and all publication information given in a 'References' slide |
||
Organization of presentation |
|||
Purpose of slides |
Purpose of each slide is clear to the listener (title of slide contains premise) |
||
Continuity |
Effective transitions between slides contribute to a continuous sequence of connected ideas, slides flow well |
||
Roadmap |
Provides a roadmap/preview then several reminders/singpost during the talk so that the listener never feels lost |
||
Figures |
Every figure and image is clearly labeled and all figures are fully explained by the presenter |
||
Attractiveness |
slides are laid out well, text is easy to read and colors do not clash, there are no distracting transitions |
||
Timing |
15 min |
||
,
Introduction
Shah, S. I., Paine, J. G., Perez, C., & Ullah, G. (2019). Mitochondrial fragmentation and network architecture in degenerative diseases. PloS one, 14(9), e0223014.
A CAG repeat expansion in the HTT gene is the hallmark of Huntington's disease, an adult neurodegenerative condition (Shah et al.,2019). HD's pathogenesis remains a mystery; however, mitochondrial dysfunction has been linked. To study mitochondrial dynamics in HD, C. elegans models were used. Body wall muscle suffers from mitochondrial fragmentation and network disruption due to huntingtin exon one expression. UNLIKE EARLY HD WORMS, older HD worms broke into massive polyglutamine protein clumps. To restore mitochondrial morphology, DRP-1 was decreased, the GTPase responsible for mitosis. Reducing expression of DRP-1 may have detrimental effects, as was observed. We looked at whether targeting other genes may lessen mitochondrial fragmentation to avoid the negative repercussions of modifying drop-1. Many new genetic targets for HD worm movement enhancements were uncovered using this approach. Page-3) increased the worms' ability to move and repaired mitochondrial structure. Scientists reduced mitochondrial fragmentation in HD animals by targeting other genes rather than the mitochondrial gene. This study had identified possible HD therapy targets for improving mitochondrial health.
Machiela, E., Rudich, P. D., Traa, A., Anglas, U., Soo, S. K., Senchuk, M. M., & Van Raamsdonk, J. M. (2021). Targeting mitochondrial network disorganisation is protective in C. elegans models of Huntington’s disease. 12(7), 1753
Fragmentation of mitochondrial networks had been linked to several neurological, renal, and metabolic diseases. But in a wide range of clinical conditions, there was no quantitative estimate of the microscopic factors that induced mitochondrial fission and fusion imbalances and, therefore, network disintegration; According to the findings of this research, there was significant network fragmentation in cells from Alzheimer's patients and those with HD, as well as those with other neurodegenerative conditions including ALS, Parkinson's, optic neuropathy, diabetes, and cancer (DS). Fission and fusion rates were also shown to alter dramatically under different conditions. Due to long-term interactions, the balance between mitochondrial fission and fusion was disrupted and became the underlying cause of the observed cell fragmentation in AD, HD, DS, renal injury, Ca2+ overload, diabetes/cancer illnesses, OPA, PD, and the ALS disorders. The delicate structure and topology of the network determined how fragmentation affected numerous cell activities in illnesses.
Traa, A., Machiela, E., Rudich, P. D., Soo, S. K., Senchuk, M. M., & Van Raamsdonk, J. M. (2021). Identification of Novel Therapeutic Targets for Polyglutamine Diseases That Target Mitochondrial Fragmentation. International Journal of Molecular Sciences, 22(24), 13447.
Polyglutamine diseases with a trinucleotide CAG repeat increase had been linked to age-related neurodegeneration. Mitochondrial function was disrupted in HD and other polyglutamine diseases. Even though it had been proven to minimise mitochondrial fragmentation in HD models by blocking the mitochondrial fission protein DRP1, this approach was harmful to both wild-type animals and HD models. In the Neur67Q polyglutamine toxicity model in C. elegans neurons, the effect of reduced mitochondrial fragmentation was investigated. GABAergic neurons in Neur-67Q worms had decreased mitochondrial function. Near-67Q worms' motility and longevity were improved when Drop-1 was disrupted. Near-67Q worms were given eleven RNA interference (RNAi) clones, each of which
Analysis
Introduction
In this autosomal dominant neurodegenerative syndrome, the polyglutamine tract of the Huntingtin protein is expanded, resulting in neurodegenerative disease. People with HD are often less capable, both mentally and physically. High-glutamine gene mutations cause HD. The striatum's GABAergic medium spiny neurons atrophy despite Htt being present in every cell and illness in many tissues.
The mitochondrial dynamics of HD have been studied recently. To suit the needs of the cell, the mitochondria's structure and distribution evolved. Fission and fusion were used to discover it. The mitochondria of HD mice were smaller than those of normal mice, suggesting that the body's mitochondria are more fragmented. There was mitochondrial fragmentation in HD patients due to fissions, fusions, or both. In HD models, the fragmentation of mitochondria was minimised. In HD worms, RNAi targeting drp1 resulted in increased motility. R6/2 HD mice treated with a DRP-1 inhibitor showed improvements in their behaviour, survival, neuropathology, and the number of cristae visible under an electron microscope. HD's pathophysiology and mitochondrial fragmentation as a potential treatment were studied. C. elegans models were used to analyse an organism with disease-relevant phenotypic aberrations. HD worm movement was improved by RNAi clones that decreased mitochondrial fragmentation.
The first codon of the Gene encoding has a CAG repeat expansion that causes HD. Between SCA6 and SCA8, the number of CAG repeats that cause sickness ranges between 21 and 55. (SCA3). In either case, the CAG repeat expansion is more than likely responsible for the sickness, regardless of the patient's ancestry.. Multiple lines of evidence pointed to mitochondrial dysfunction in poly aetiology. A hallmark of HD is mitochondrial fragmentation, occurring in both transgenic HD cell lines and human HD cells. Other polyQ disorders with mitochondrial fragmentation include SCA3, SCA7, and SBMA. For mitochondrial fragmentation, CAG repeat expansion is sufficient. The mitochondrial fission protein DRP1 has been the focus of several studies in HD models in an attempt to minimize mitochondrial disintegration. Contrary to popular belief, genetic or pharmacological interventions that directly or indirectly limit DRP1 activity have improved HD characteristics. DRP-1 deletion in an HD model was detrimental, but RNAi knockdown of the same protein had mixed results.
Methods
NGM plates were inoculated with OP50 bacterium, and many strains were employed and kept at 20°C. PCR genotyping and fluorescence microscopy observations were used to confirm all crossovers. (Traa et al., 2021).
Confocal anatomical and molecular imaging
Mitochondrial RFP-specific specimen were used for the experiment because they expressed it exclusively in the muscles of their body walls. Pixel pickers were utilised to choose a variety of control minor fps. After adding the threshold mask, they used Nikon Elements AR's measure objects tool to get the measurements needed. Prism was used for all other calculations.
Oxygen consumption
BOC was measured using the Seahorse XFe96 analyser. They were washing adult synchronised worms in M9 buffer. It was necessary to normalise the respiration rate for each well based on the number of worms contained there. To establish a link between the rate of oxidative phosphorylation and the phenotypes they were studying, they decided to measure the oxygen intake of each worm.
ATP production
The ATP kit utilised luminescence to measure ATP levels. Age synchronisation was accomplished by limiting worm laying to 200 at a time. Molecular Probes' ATP determination kit collected the supernatant and quantified it.
Rate of movement
Video-tracking and computer analysis were used to measure the thrashing rate in fluids to determine the impacts of drop-1.
Day 1 subjects were segregated at the L4 stage before testing. RNAi clones were tested to see whether they affected animal development and if they did, the animals were grown on empty vectors before being given the clones. Images were captured with a Zyla Andor sCM05 camera and a Nikon Eclipse Ti microscope.
Discussion
To maintain cell function, mitochondrial fission and fusion must be balanced. Mitochondrial connectivity fragmentation, whether it occurred as a result of major or minor alterations in mitochondrial dynamics, was often connected to degenerative illnesses. It was shown that in healthy cells, mitochondria generated a linked system with a greater mean degree, immense cluster and division lengths, clusters and swirls, than in cells with nine distinct diseases after analysing photos of mitochondrial networks from several prior experimental investigations. The author created a mitochondrial model network based on these illnesses that included these differences. During transient fusion, a pair of mitochondria nearby fused for a brief period (45 s on average) before dissociating and returning to their original topologies. In all, nine conditions fall into two groups. Mitochondrial lateral contact caused mitochondrial fusion to be decreased and fission enhanced in the cells of people with Alzheimer's disease, heart disease, diabetes/cancer, and acute kidney impairment. Because of the reduced fusing caused by longitudinal contact, the mitochondrial network became more fractious. The form and position of mitochondria fragmentation determined how fragmentation affects cell function because of mitochondrial disintegration and fusion in microscopic detail.
Multiple animal models have been developed to study the aetiology of HD and other polyQ illnesses since discovering the genes that cause these illnesses. HD and polyQ contagiousness had been studied in C. elegans models. To examine mitochondrial dynamics, C. elegance’s translucent nature made it possible to see mitochondrial morphology in live organisms linked to overall phenotypes.
Expansion of CAG Repeats Affects the Morphology and Function of Neuronal Mitochondrion.
A significant amount of neuropathology can be found in patients with HD and related polyQ disorders. To get a better understanding of mitochondrial structure in cells, the author developed many new strains. When the concentration of CAG in Neur-67Q neurons grew, mitochondria in the peripheral nerves axons decreased, leading to mitochondrial disintegration in cells. The mitochondrial activity of Neur-67Q worms was changed, resulting in higher oxygen consumption and lower ATP levels Since neurons, which constituted 302 of the worm's 959 cells, were the only places. Polly was expressed, the alterations were obvious. The severity of the discrepancies suggested that changes in the mitochondrial function of neurons affected other organs as well. Pdr-1 and PRKN deficiency was found in a worm model of Parkinson's disease, with comparable results. Near-67Q worms with drop-1 deletion showed enhanced motility despite reduced ATP levels. Similar results were obtained in wild-type worms with drop-1 deletion, which lowered ATP levels but not motility.
Disrupting Mitochondrial Fission's Tissue-Specific Effects
In neuronal and muscular polyQ toxicity models, the effects of eliminating drop-1 were studied differently. Different tissues had different levels of mitochondrial fission and fusion. To make things even more interesting, drop-1 deletion in body wall muscle did not affect mitochondrial morphology, whereas reducing drop-1 levels in neurons did.
Conclusion
In HD models in C. elegans, polyglutamine aggregation is linked to mitochondrial breakage and disorganization. Our findings suggest that DRP1 may not be an effective therapeutic target for HD or that great caution must be taken to ensure that just a certain proportion of DRP1 levels are reduced (Traa et al., 2021). In a C. elegans model of HD, we found three new genetic targets in addition to DRP1 that enhanced both crawling and swimming. Mitochondrial fragmentation may be avoided without interfering with the mitochondrial fission mechanism, as shown by these genetic targets. Mitochondria-fragmentation correction techniques may be effective in the treatment of HD.
We conclude by discovering that a C. elegans polyQ neural model had mitochondrial alteration of mobility and shortening of life expectancy. In Neur-67Q worms, reducing the amount of the mitochondrial fission gene drop-1 boosted motility and longevity. (Traa et al., 2021). RNAi clones that minimize mitochondrial fragmentation increased the mobility and survival of Near-67Q worms. HD, other polyQ disorders may be treated by reducing mitochondrial fragmentation while avoiding the harmful effects of changing DRP-1. A lack of evidence concluded that these results would need to be further investigated using the techniques outlined. Nevertheless, the author believes that the method may be utilised to develop computational tools that can infer the size and kind of signalling abnormalities in different illnesses and abnormalities in various diseases. Similar experimental approaches might test the hypotheses on lateral and longitudinal fission/fusion disruption in diverse conditions. Individual mitochondria may be seen exchanging matrix contents as they fuse or separate in real-time.
References
Traa, A., Machiela, E., Rudich, P. D., Soo, S. K., Senchuk, M. M., & Van Raamsdonk, J. M. (2021). Identification of Novel Therapeutic Targets for Polyglutamine Diseases That Target Mitochondrial Fragmentation. International Journal of Molecular Sciences, 22(24), 13447.
Machiela, E., Rudich, P. D., Traa, A., Anglas, U., Soo, S. K., Senchuk, M. M., & Van Raamsdonk, J. M. (2021). Targeting mitochondrial network disorganisation is protective in C. elegans models of Huntington’s disease. Ageing and Disease, 12(7), 1753.
Shah, S. I., Paine, J. G., Perez, C., & Ullah, G. (2019). Mitochondrial fragmentation and network architecture in degenerative diseases. PloS one, 14(9), e0223014.
,
RESEARCH ARTICLE
Mitochondrial fragmentation and network
architecture in degenerative diseases
Syed I. Shah, Johanna G. Paine, Carlos Perez, Ghanim UllahID*
Department of Physics, University of South Florida, Tampa, FL, United States of America
Abstract
Fragmentation of mitochondrial network has been implicated in many neurodegenerative,
renal, and metabolic diseases. However, a quantitative measure of the microscopic parame-
ters resulting in the impaired balance between fission and fusion of mitochondria and conse-
quently the fragmented networks in a wide range of pathological conditions does not exist.
Here we present a comprehensive analysis of mitochondrial networks in cells with Alzhei-
mer’s disease (AD), Huntington’s disease (HD), amyotrophic lateral sclerosis (ALS), Parkin-
son’s disease (PD), optic neuropathy (OPA), diabetes/cancer, acute kidney injury, Ca 2+
overload, and Down Syndrome (DS) pathologies that indicates significant network fragmen-
tation in all these conditions. Furthermore, we found key differences in the way the micro-
scopic rates of fission and fusion are affected in different conditions. The observed
fragmentation in cells with AD, HD, DS, kidney injury, Ca 2+
overload, and diabetes/cancer
pathologies results from the imbalance between the fission and fusion through lateral inter-
actions, whereas that in OPA, PD, and ALS results from impaired balance between fission
and fusion arising from longitudinal interactions of mitochondria. Such microscopic differ-
ence leads to major disparities in the fine structure and topology of the network that could
have significant implications for the way fragmentation affects various cell functions in differ-
ent diseases.
Introduction
Mitochondrion is a ubiquitous organelle and powerhouse of the cell that exists in living cells as
a large tubular assembly, extending throughout the cytoplasm and in close apposition with
other key organelles such as nucleus, the endoplasmic reticulum, the Golgi network, and the
cytoskeleton [1–5]. Its highly flexible and dynamic network architecture ranging from a few
hundred nanometers to tens of micrometers with the ability to rapidly change from fully con-
nected to fragmented structures makes it suitable for diverse cytosolic conditions and cell
functions [6–8]. Cells continuously adjust the rate of mitochondrial fission and fusion in
response to changing energy and metabolic demands to facilitate the shapes and distribution
of mitochondria throughout the cell [9–11]. Similarly, stressors such as reactive oxygen species
(ROS) and Ca 2+
dysregulation interfere with various aspects of mitochondrial dynamics [12–
14]. This is probably why many neuronal, metabolic, and renal diseases have been linked to
PLOS ONE | https://doi.org/10.1371/journal.pone.0223014 September 26, 2019 1 / 21
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OPEN ACCESS
Citation: Shah SI, Paine JG, Perez C, Ullah G
(2019) Mitochondrial fragmentation and network
architecture in degenerative diseases. PLoS ONE
14(9): e0223014. https://doi.org/10.1371/journal.
pone.0223014
Editor: Hemachandra Reddy, Texas Technical
University Health Sciences Center, UNITED
STATES
Received: April 18, 2019
Accepted: September 11, 2019
Published: September 26, 2019
Copyright: © 2019 Shah et al. This is an open access article distributed under the terms of the
Creative Commons Attribut
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